Import Image Stack Filter¶
Group (Subgroup)¶
IO (Input)
Description¶
This filter imports a 3D Stack of images in specially numbered sequences so that the resulting data has multiple components at each pixel. This might be handy if the user has RGB data where each channel is in a separate file. This filter is also handy for SEM multi-tilt series of images that need to be segmented.
For example a file set with the following names:
Small_IN100_1-0.tiff
Small_IN100_1-1.tiff
Small_IN100_1-2.tiff
Small_IN100_1-3.tiff
which comes from an SEM Multi-Tilt series data set can be explained as follows.
| Path | File Prefix | Slice Index | Separator | Component Index | File Suffixe | File Extension |
|---|---|---|---|---|---|---|
| /Some/Path | Small_IN100 | 1 | - | 0 | tiff | |
| /Some/Path | Small_IN100 | 1 | - | 1 | tiff | |
| /Some/Path | Small_IN100 | 1 | - | 2 | tiff | |
| /Some/Path | Small_IN100 | 1 | - | 3 | tiff |
From this example the data set would have an ImageGeometry with a size of 610 x 610 x 1 (X, Y, Z) and the Cell data would be unsigned 8 bit char x 4 components where each component represents a specific tilt in the series.
Notes¶
8 Bit and 16 bit images (Both color and grayscale should be valid inputs). Color images will be converted to grayscale via the luminosity algorithm or just the first channel of the RGB array can be used. The final array MUST essentially be a multi-component grayscale image.
Parameters¶
| Name | Type |
|---|---|
| Input File List | VectorFileListInfo type |
| Origin | float x 3 |
| Resolution | float x 3 |
| Convert Color To Grayscale | Bool |
| Data Container Name | String |
| Cell Attribute Matrix Name | String |
| Vector Data Array Name | String |
Required DataContainers¶
NONE
Required Objects¶
NONE
Created Objects¶
| Kind | Default Name | Type | Component Dimensions | Description |
|---|---|---|---|---|
| Data Container | Data Container Name | N/A | N/A | |
| ImageGeometry | N/A | N/A | ||
| Cell AttributeMatrix | N/A | N/A | ||
| VectorData | N/A | N/A |
Authors¶
Contact Info dream3d@bluequartz.net
Version 1.0.0
License See the License.txt file that came with DREAM3D.
Example Pipelines¶
License & Copyright¶
Please see the description file distributed with this Plugin
DREAM.3D Mailing Lists¶
If you need more help with a Filter, please consider asking your question on the DREAM.3D Users Google group!