Import AxioVision V4 Montage¶
Group (Subgroup)¶
Import/Export (Import)
Description¶
This filter imports in a set of tiled images collected by a Zeiss montaging microscope. The user must point to the XML file which contains the meta-data for all the images. The images must be located in the same directory as the XML file. Each image will be put in an individual data array, and the collection of data arrays will sit in the created attribute matrix. The data arrays will be named the same as the image file name.
Parameters¶
| Name | Type | Comment |
|---|---|---|
| Input File | Path | This is the XML file generated by Zeiss that contains information about all of the tiled images |
| Convert to GrayScale | Bool | The filter will show an error if the images are already in grayscale format |
| Change Origin | Bool | Set the origin of the mosaic to a user defined value |
| Change Spacing | Bool | Set the spacing of the mosaic to a user defined value |
| Origin | Float 3 Vect | The new origin of the mosaic |
| Spacing | Float 3 Vect | The new spacing of the mosaic |
Created Attribute Matrix¶
| Default Name | Description | Comment |
|---|---|---|
| DataContainer Prefix | This attribute matrix holds all of the images in a given montage that are referenced by the given XML file | |
| Cell AttributeMatrix Name | This attribute matrix holds all of the images in a given montage that are referenced by the given XML file | |
| Image AttributeArray Name | The name of the Attribute Array that holds the image data. | Will be the same for all tiles |
| Meta Data AttributeMatrix Name | The name of the Meta-Data AttributeMatrix from the AxioVision _meta.xml file |
Created Data Container¶
| Default Name | Description | Comment |
|---|---|---|
| Zeiss Axio Vision Montage | This data container holds the attribute matrix and data arrays generated above. | One DataContainer for each Tile/Image in the mosaic |
Example Pipelines¶
License & Copyright¶
Please see the description file distributed with this plugin.
DREAM3D Mailing Lists¶
If you need more help with a filter, please consider asking your question on the DREAM3D Users mailing list: