Illumination Correction¶
Group (Subgroup)¶
ITKImageProcessing (Processing)
Description¶
This filter takes a series of grayscale images (8 bit or 16 bit) in a given set of Data Containers averages them. The image content only contributes to the average if the value at a given pixel is between the lowest and highest allowed image value set by the user. The user can optionally apply a median filter to the resulting background image. The user can optionally apply the background correction to the input images. The user can optionally export the corrected images to a directory on the file system.
If the user selects Subtract Background from Current Images, the background will be subtracted, and new image data will be created.
Parameters¶
Name | Type |
---|---|
List of DataContainers that have the input images. One per Data Container | String List |
Lowest Allowed Image Value | int |
Highest Allowed Image Value | int |
Apply Median Filter to background Image | bool |
Median Radius | Float [3] |
Apply Illumination Correction to Input Images | bool |
Required Objects¶
Kind | Default Name | Type | Component Dimensions | Description |
---|---|---|---|---|
DataContainer(s) | QStringList | N/A | List of DataContainers that contain a Cell Attribute Matrix that holds an input image. | |
String | Tile Data | Cell AttributeMatrix | N/A | Name of the Cell AttributeMatrix that is common to all the input DataContainers |
String | Image Data | AttributeArray | 8 or 16 bit GrayScale Images | Name of the input image that is in common to the input Cell AttributeMatrix |
Created Objects¶
Kind | Default Name | Type | Component Dimensions | Description |
---|---|---|---|---|
Attribute Array | Corrected Image | N/A | The corrected image (optional) that is stored next to each input image | |
DataContainer | DataContainer Name | N/A | ||
AttributeMatrix | AttributeMatrix Name | |||
AttributeMatrix | AttributeArray Name |
Example Pipelines¶
License & Copyright¶
Please see the description file distributed with this plugin.
DREAM3D Mailing Lists¶
If you need more help with a filter, please consider asking your question on the DREAM3D Users mailing list: https://groups.google.com/forum/?hl=en#!forum/dream3d-users